Problem Sets and Exam Materials
- Review Sheet for the final exam. It will be 3 hr take home, closed books and notes. Due on 12/17 at 5 PM.
- Practice exam from 2014 and its Solutions
Problem Set #9 and its Solutions
- Some helpful links.
- azurin.pse PyMOL session file
- SerRS.pse PyMOL session file
- Article by Marshall et al. on redox tuning of azurin
- Kinetics Quiz Solutions 2015
- Kinetics Quiz from 2014 and the Solutions
Problem Set #8 wand its Solutions
- Some helpful links.
- FucI.pse PyMOL session file
- esterase.pse PyMOL session file
Problem Set #7 and its Solutions
- Some helpful links.
- TPL.pse PyMOL session file
- Article by Milic et al. on Tyrosine Phenol Lyase
Problem Set #6 and its Solutions
- Some helpful links.
- catab.pse PyMOL session file
- News blurb on Godwin's work on lead coordination
- Paper from the Lerner lab on an antibody that catalyzes ring closure
- Paper describing structure of that antibody.
Stuff for the first exam
- Solutions for the first exam.
- Review Sheet for the first exam. It will be 3 hr take home, closed books and notes. Due on 10/15 at 9 AM.
- Practice exam from 2014 and its Solutions
Problem Set #5 and its Solutions
- Some helpful links.
- ROS.pse PyMOL session file
- ZFbp.pse PyMOL session file
- The article by Guckian et al. informing question 1 is here
- ...and his paper for question 5 is here
Problem Set #4 and its Solutions
- Some helpful links.
- switch.pse PyMOL session file
- Paper from Sauer Lab on switch arc repressor.
- tripeptide.pse PyMOL session file
- The article by Loening et al. informing questions 7 is here
- You can download the structure of the S64 spider venom from the PDB
- The article by Li et al. informing question 6 is here
Problem Set #3 and its Solutions
- Some helpful links.
- ProtG.pse PyMOL session file
- TrpZip.pse PyMOL session file
- Paper on TrpZip Wu et al. (2010) Biochemistry, 49, 4705
Problem Set #2 and its Solutions
- Some helpful links.
- Helical wheel generator
- Fragment Ion Calculator
- Paper on twisted amide: Komorov et al. (2015) JACS, 351, 586
- Paper on glycine substitution: Baldwin (1991) Nature, 137, 926
Problem Set #1 and its Solutions
